Install R kernel to JupyterHub in Palmetto

Overview

Teaching: 5 min min
Exercises: 0 min

Questions

• How to Install R kernel to JupyterHub in Palmetto

Objectives

Create conda environment

Request a node and follow these steps:

$ module load anaconda3/2019.10-gcc/8.3.1
$ conda create -n r_env r-base=3.6.1
$ source activate r_env
> install.packages("IRkernel") #(select number like 81 for closest CRAN)
> IRkernel::installspec()

Open Palmetto JupyterHub either through the main page or Open OnDemand, you will see R kernel there and ready to use

Key Points

• R, JupyterHub kernel